Posted by Wan-Jia in GenePipe, primerz, qualiseq, variowatch on 2012年2月3日星期五
Bug fixes: The progress bar shows message of invalid taskID when submitting.
Posted by Wan-Jia in GenePipe, MegaQuery, variowatch on 2011年12月29日星期四
Add link of VarioWatch result in the MegaQuery Download file (variation_annoation.csv).
Posted by Wan-Jia in 1000 Genomes, GenePipe, MegaQuery on 2011年12月5日星期一
- Add filters of risk level and of location.
- Support file format of Illuma CASAVA 1.8.x for MegaQuery download. ('snp.txt' and 'indel.txt' in CASAVA Variant Detection output folder.)
- Modify the logic for filtering out variants in 1000 Genomes Project. Variants with the same chromosome and pysical position but different allele as the queries no longer appear in 1000genome_allele_freq.csv.
- Modify format of 1000genome_allele_freq.csv file. Replace field "Query Name" by two fields "Chr" and "Position".
Posted by Wan-Jia in 1000 Genomes, GenePipe, MegaQuery on 2011年11月7日星期一
Update data of 1000 Genomes Project to October 2011 Integrated Variant Set of for VarioWatch (Build NCBI 37.2).
Posted by Wan-Jia in 1000 Genomes, GenePipe, MegaQuery on 2011年10月25日星期二
1. Add filter for MegaQuery Download.
2. Add data release on June 23, 2011 of 1000 Genomes Project for VarioWatch (Build NCBI 37.2).
Posted by Wan-Jia in GenePipe, MegaQuery, qualiseq, Splice Site on 2011年10月7日星期五
1. Update dbSNP version from dbSNP132 to dbSNP134 for GenePipe NCBI 37.2.
2. Update Ensembl version from release 63 to release 64.
3. QualiSeq batch download supports FANS format.
4. QualiSeq bugs fix:
- Sequence download.
- SNP Info of UCSC and of Ensembl.
6. MegaQuery Indel Variations:
- Add location type of "GT-AG splice site".
- Add new info: "Risk by Location".
- Add ESE/ESS motif analysis.
Posted by Wan-Jia in 1000 Genomes, GenePipe, MegaQuery, Splice Site, variowatch on 2011年9月26日星期一
MegaQuery Download:
1. Improve location type.
- add Intragenic location for indel variation.
- add Intragenic location and GT-AG splice site for single point variation.
3. Add risk type and risk level for single point variation in GT-AG splice site.
4. Add 1000 Genomes data for single point variation(NCBI36 only).
Posted by Wan-Jia in GenePipe, variowatch on 2011年9月8日星期四
- MegaQuery Download supports indel type variations.
- MegaQuery Download provides gene annotation file.
Posted by Dixen in release, variowatch on 2011年8月18日星期四
MegaQuery Download is now available for VarioWatch NCBI36 version.
Posted by Wan-Jia in GenePipe, primerz, qualiseq, variowatch on 2011年8月11日星期四
- QualiSeq: update Ensembl human genome sequence to release 63.
- PrimerZ: update Ensembl database to release 63.
- Variowatch bug fix: motif sequence of ESE and ESS mapping to target sequence on reverse strand displayed incorrectly from 3 prime end to 5 prime end.
- New function of Variowatch: fast download of annotations for millions of variants.
